Package: libdr 1.0.1

libdr: Support Functions used by the LIBDR LCMM Analysis

This package provides support functions frequently used by Constantine et al. for their paper, "Large-scale clustering of longitudinal faecal calprotectin and C-reactive protein profiles in inflammatory bowel disease". These functions are primarily used to manipulate data and visualise findings.

Authors:Nathan Constantine-Cooke [aut, cre], Catalina Vallejos [aut]

libdr_1.0.1.tar.gz
libdr_1.0.1.zip(r-4.5)libdr_1.0.1.zip(r-4.4)libdr_1.0.0.zip(r-4.3)
libdr_1.0.1.tgz(r-4.4-any)libdr_1.0.0.tgz(r-4.3-any)
libdr_1.0.1.tar.gz(r-4.5-noble)libdr_1.0.1.tar.gz(r-4.4-noble)
libdr_1.0.1.tgz(r-4.4-emscripten)libdr_1.0.1.tgz(r-4.3-emscripten)
libdr.pdf |libdr.html
libdr/json (API)

# Install 'libdr' in R:
install.packages('libdr', repos = c('https://nathansam.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/vallejosgroup/lothian-ibdr/issues

On CRAN:

clusteringcrpdenmarkfcalibdlcmmscotland

3.51 score 17 scripts 10 exports 75 dependencies

Last updated 18 hours agofrom:2cae64a89c. Checks:3 OK, 2 NOTE, 2 FAILURE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 20 2025
R-4.5-winNOTEJan 20 2025
R-4.5-linuxNOTEJan 20 2025
R-4.4-winOKJan 20 2025
R-4.4-macOKJan 20 2025
R-4.3-winOUTDATEDDec 13 2024
R-4.3-macOUTDATEDDec 13 2024

Exports:buildDTcompareClusteringdescribe_catlcmmHeatmapmakeMetricsmlrPlotplotCatrankCumulativereLabelspaghettiPlot

Dependencies:BiocGenericscirclizecliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayondigestdoParalleldplyrevaluatefansifarverforcatsforeachgenericsGetoptLongggplot2GlobalOptionsgluegridExtragtablehighrIRangesisobanditeratorsknitrlabelinglatticelcmmlifecyclemagrittrmarqLevAlgMASSMatrixmatrixStatsmgcvmunsellmvtnormnlmennetnumDerivpatchworkpillarpkgconfigplyrpngpracmapurrrR6randtoolboxRColorBrewerRcpprjsonrlangrngWELLS4Vectorsscalesshapestringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisviridisLitewithrxfunyaml